IL_9GR1_108

3D structure

PDB id

9GR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-TEC complex in delivery state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9GR1|1|a|U|1213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GR1_108 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0503

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9GR1|1|a|C|1210
9GR1|1|a|U|1211
9GR1|1|a|G|1212
9GR1|1|a|U|1213
9GR1|1|a|G|1214
9GR1|1|a|A|1215
9GR1|1|a|A|1216
9GR1|1|a|G|1217
*
9GR1|1|a|U|1236
9GR1|1|a|G|1237
9GR1|1|a|G|1238
9GR1|1|a|A|1239
9GR1|1|a|G|1240

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain p

50S ribosomal protein L20