IL_9GR1_138

3D structure

PDB id

9GR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-TEC complex in delivery state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GR1_138 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0479

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9GR1|1|a|U|1853
9GR1|1|a|U|1854
9GR1|1|a|A|1855
9GR1|1|a|A|1856
9GR1|1|a|U|1857
9GR1|1|a|U|1858
9GR1|1|a|G|1859
9GR1|1|a|A|1860
9GR1|1|a|U|1861
9GR1|1|a|G|1862
*
9GR1|1|a|U|1886
9GR1|1|a|U|1887
9GR1|1|a|G|1888
9GR1|1|a|A|1889
9GR1|1|a|U|1890
9GR1|1|a|C|1891
9GR1|1|a|G|1892
9GR1|1|a|A|1893
9GR1|1|a|A|1894
9GR1|1|a|G|1895

Current chains

Chain a

23S ribosomal RNA

Nearby chains