IL_9GR1_158

3D structure

PDB id

9GR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-TEC complex in delivery state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

9GR1|1|a|G|2580, 9GR1|1|a|A|2581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GR1_158 not in the Motif Atlas

Homologous match to IL_5J7L_340

Geometric discrepancy: 0.0616

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

9GR1|1|a|C|2514
9GR1|1|a|U|2515
9GR1|1|a|C|2516
*
9GR1|1|a|G|2578
9GR1|1|a|C|2579
9GR1|1|a|G|2580
9GR1|1|a|A|2581
9GR1|1|a|G|2582

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain z

50S ribosomal protein L32