IL_9GUL_027

3D structure

PDB id

9GUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of FLuc-XBP1u+ stalled human 60S ribosome nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGCCCGG*UCC

Length

10 nucleotides

Bulged bases

9GUL|1|L5|C|501, 9GUL|1|L5|C|502, 9GUL|1|L5|C|503, 9GUL|1|L5|G|504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GUL_027 not in the Motif Atlas

Geometric match to IL_9H3G_227

Geometric discrepancy: 0.2908

The information below is about IL_9H3G_227

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9GUL|1|L5|G|499
9GUL|1|L5|G|500
9GUL|1|L5|C|501
9GUL|1|L5|C|502
9GUL|1|L5|C|503
9GUL|1|L5|G|504
9GUL|1|L5|G|505
*
9GUL|1|L5|U|653
9GUL|1|L5|C|654
9GUL|1|L5|C|655

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LQ

60S ribosomal protein L18