IL_9GUL_119

3D structure

PDB id

9GUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of FLuc-XBP1u+ stalled human 60S ribosome nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*CGCG

Length

16 nucleotides

Bulged bases

9GUL|1|L5|A2M|3785, 9GUL|1|L5|C|3791, 9GUL|1|L5|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GUL_119 not in the Motif Atlas

Homologous match to IL_9PN5_087

Geometric discrepancy: 0.0784

The information below is about IL_9PN5_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.4

Basepair signature

cWW-L-tHH-cHW-cWW-L-L-R-L

Number of instances in this motif group

10

Unit IDs

9GUL|1|L5|C|3781
9GUL|1|L5|5MC|3782
9GUL|1|L5|A|3783
9GUL|1|L5|A|3784
9GUL|1|L5|A2M|3785
9GUL|1|L5|U|3786
9GUL|1|L5|G|3787
9GUL|1|L5|C|3788
9GUL|1|L5|C|3789
9GUL|1|L5|U|3790
9GUL|1|L5|C|3791
9GUL|1|L5|OMG|3792
*
9GUL|1|L5|C|3808
9GUL|1|L5|G|3809
9GUL|1|L5|C|3810
9GUL|1|L5|G|3811

Current chains

Chain L5

28S rRNA

Nearby chains