IL_9GUQ_012

3D structure

PDB id

9GUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S PIC (Pre-Initiation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9GUQ|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GUQ_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1315

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

9GUQ|1|A|G|147
9GUQ|1|A|G|148
9GUQ|1|A|A|149
9GUQ|1|A|U|150
9GUQ|1|A|A|151
9GUQ|1|A|A|152
9GUQ|1|A|C|153
*
9GUQ|1|A|G|168
9GUQ|1|A|C|169
9GUQ|1|A|U|170
9GUQ|1|A|A|171
9GUQ|1|A|A|172
9GUQ|1|A|U|173
9GUQ|1|A|A|174
9GUQ|1|A|C|175

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain U

30S ribosomal protein S20