IL_9GUQ_014

3D structure

PDB id

9GUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S PIC (Pre-Initiation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

9GUQ|1|A|U|244, 9GUQ|1|A|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GUQ_014 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1337

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

9GUQ|1|A|G|242
9GUQ|1|A|A|243
9GUQ|1|A|U|244
9GUQ|1|A|U|245
9GUQ|1|A|A|246
9GUQ|1|A|G|247
*
9GUQ|1|A|C|277
9GUQ|1|A|G|278
9GUQ|1|A|A|279
9GUQ|1|A|C|280
9GUQ|1|A|G|281
9GUQ|1|A|A|282
9GUQ|1|A|U|283
9GUQ|1|A|C|284

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain M

30S ribosomal protein S12

Chain R

30S ribosomal protein S17