3D structure

PDB id
9GUQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S PIC (Pre-Initiation complex)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
G(PSU)GCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
9GUQ|1|A|A|532, 9GUQ|1|A|U|534, 9GUQ|1|A|A|535
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GUQ_025 not in the Motif Atlas
Homologous match to IL_4LFB_021
Geometric discrepancy: 0.2229
The information below is about IL_4LFB_021
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_52042.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

9GUQ|1|A|G|515
9GUQ|1|A|PSU|516
9GUQ|1|A|G|517
9GUQ|1|A|C|518
9GUQ|1|A|C|519
9GUQ|1|A|A|520
9GUQ|1|A|G|521
*
9GUQ|1|A|C|528
9GUQ|1|A|G|529
9GUQ|1|A|G|530
9GUQ|1|A|U|531
9GUQ|1|A|A|532
9GUQ|1|A|A|533
9GUQ|1|A|U|534
9GUQ|1|A|A|535
9GUQ|1|A|C|536

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain D
Small ribosomal subunit protein uS3
Chain E
Small ribosomal subunit protein uS4
Chain M
30S ribosomal protein S12
Chain X
mRNA

Coloring options:


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