IL_9GUQ_033

3D structure

PDB id

9GUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S PIC (Pre-Initiation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

9GUQ|1|A|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GUQ_033 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.0925

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9GUQ|1|A|U|662
9GUQ|1|A|A|663
9GUQ|1|A|G|664
9GUQ|1|A|A|665
9GUQ|1|A|G|666
*
9GUQ|1|A|U|740
9GUQ|1|A|G|741
9GUQ|1|A|G|742
9GUQ|1|A|A|743

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein bS6, non-modified isoform

Chain P

Small ribosomal subunit protein uS15

Chain S

30S ribosomal protein S18

Chain V

30S ribosomal protein S21