3D structure

PDB id
9GUS (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S mRNA delivery complex TEC resolved (30S only)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
G(PSU)GCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
9GUS|1|A|A|532, 9GUS|1|A|U|534, 9GUS|1|A|A|535
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GUS_025 not in the Motif Atlas
Homologous match to IL_4LFB_021
Geometric discrepancy: 0.1765
The information below is about IL_4LFB_021
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.4
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
4

Unit IDs

9GUS|1|A|G|515
9GUS|1|A|PSU|516
9GUS|1|A|G|517
9GUS|1|A|C|518
9GUS|1|A|C|519
9GUS|1|A|A|520
9GUS|1|A|G|521
*
9GUS|1|A|C|528
9GUS|1|A|G|529
9GUS|1|A|G|530
9GUS|1|A|U|531
9GUS|1|A|A|532
9GUS|1|A|A|533
9GUS|1|A|U|534
9GUS|1|A|A|535
9GUS|1|A|C|536

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain D
Small ribosomal subunit protein uS3
Chain E
Small ribosomal subunit protein uS4
Chain M
30S ribosomal protein S12

Coloring options:


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