IL_9GUS_047

3D structure

PDB id

9GUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S mRNA delivery complex TEC resolved (30S only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

9GUS|1|A|C|1200, 9GUS|1|A|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GUS_047 not in the Motif Atlas

Homologous match to IL_5J7L_048

Geometric discrepancy: 0.1078

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

9GUS|1|A|G|1057
9GUS|1|A|G|1058
*
9GUS|1|A|U|1199
9GUS|1|A|C|1200
9GUS|1|A|A|1201
9GUS|1|A|U|1202
9GUS|1|A|C|1203

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS3

Chain K

30S ribosomal protein S10

Chain O

30S ribosomal protein S14