IL_9GUS_062

3D structure

PDB id

9GUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S mRNA delivery complex TEC resolved (30S only)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUU*GAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GUS_062 not in the Motif Atlas

Geometric match to IL_1D4R_003

Geometric discrepancy: 0.1826

The information below is about IL_1D4R_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9GUS|1|A|G|1422
9GUS|1|A|G|1423
9GUS|1|A|U|1424
9GUS|1|A|U|1425
*
9GUS|1|A|G|1475
9GUS|1|A|A|1476
9GUS|1|A|U|1477
9GUS|1|A|U|1478

Current chains

Chain A

16S ribosomal RNA

Nearby chains