IL_9GUT_012

3D structure

PDB id

9GUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S mRNA delivery complex (bS1 resolved)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9GUT|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GUT_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1027

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

9GUT|1|A|G|147
9GUT|1|A|G|148
9GUT|1|A|A|149
9GUT|1|A|U|150
9GUT|1|A|A|151
9GUT|1|A|A|152
9GUT|1|A|C|153
*
9GUT|1|A|G|168
9GUT|1|A|C|169
9GUT|1|A|U|170
9GUT|1|A|A|171
9GUT|1|A|A|172
9GUT|1|A|U|173
9GUT|1|A|A|174
9GUT|1|A|C|175

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain U

30S ribosomal protein S20