IL_9GUT_034

3D structure

PDB id

9GUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S mRNA delivery complex (bS1 resolved)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGAAU*GGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GUT_034 not in the Motif Atlas

Homologous match to IL_5J7L_361

Geometric discrepancy: 0.0809

The information below is about IL_5J7L_361

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

9GUT|1|A|A|673
9GUT|1|A|G|674
9GUT|1|A|A|675
9GUT|1|A|A|676
9GUT|1|A|U|677
*
9GUT|1|A|G|713
9GUT|1|A|G|714
9GUT|1|A|A|715
9GUT|1|A|A|716
9GUT|1|A|U|717

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein bS6

Chain L

30S ribosomal protein S11

Chain S

30S ribosomal protein S18

Chain V

30S ribosomal protein S21