IL_9GUX_029

3D structure

PDB id

9GUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-TEC (TEC in expressome position) Inactive state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GUX_029 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.136

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

9GUX|1|A|G|450
9GUX|1|A|A|451
9GUX|1|A|A|452
9GUX|1|A|G|453
9GUX|1|A|G|454
9GUX|1|A|G|455
*
9GUX|1|A|C|477
9GUX|1|A|A|478
9GUX|1|A|U|479
9GUX|1|A|U|480
9GUX|1|A|G|481
9GUX|1|A|A|482
9GUX|1|A|C|483

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Q

30S ribosomal protein S16