IL_9GXX_022
3D structure
- PDB id
- 9GXX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.61 Å
Loop
- Sequence
- GAAGGG*CAUUGAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GXX_022 not in the Motif Atlas
- Homologous match to IL_5J7L_023
- Geometric discrepancy: 0.0892
- The information below is about IL_5J7L_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_70801.1
- Basepair signature
- cWW-cWW-L-R-tWW-L-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
9GXX|1|A|G|450
9GXX|1|A|A|451
9GXX|1|A|A|452
9GXX|1|A|G|453
9GXX|1|A|G|454
9GXX|1|A|G|455
*
9GXX|1|A|C|477
9GXX|1|A|A|478
9GXX|1|A|U|479
9GXX|1|A|U|480
9GXX|1|A|G|481
9GXX|1|A|A|482
9GXX|1|A|C|483
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain P
- Small ribosomal subunit protein bS16
Coloring options: