IL_9GXX_086

3D structure

PDB id

9GXX (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

AAUU*AU

Length

6 nucleotides

Bulged bases

9GXX|1|a|U|846

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GXX_086 not in the Motif Atlas

Geometric match to IL_5J7L_267

Geometric discrepancy: 0.0996

The information below is about IL_5J7L_267

Detailed Annotation

90 degree turn

Broad Annotation

90 degree turn

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

9GXX|1|a|A|844
9GXX|1|a|A|845
9GXX|1|a|U|846
9GXX|1|a|U|847
*
9GXX|1|a|A|933
9GXX|1|a|U|934

Current chains

Chain a

23S rRNA

Nearby chains

Chain y

Large ribosomal subunit protein uL30