IL_9GXX_106

3D structure

PDB id

9GXX (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9GXX|1|a|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GXX_106 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0741

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9GXX|1|a|C|1208
9GXX|1|a|U|1209
9GXX|1|a|G|1210
9GXX|1|a|C|1211
9GXX|1|a|G|1212
9GXX|1|a|A|1213
9GXX|1|a|A|1214
9GXX|1|a|G|1215
*
9GXX|1|a|U|1234
9GXX|1|a|G|1235
9GXX|1|a|G|1236
9GXX|1|a|A|1237
9GXX|1|a|G|1238

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein bL20