3D structure

PDB id
9GXX (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.61 Å

Loop

Sequence
GAAG*CCUGC
Length
9 nucleotides
Bulged bases
9GXX|1|a|U|1559
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GXX_114 not in the Motif Atlas
Homologous match to IL_5J7L_296
Geometric discrepancy: 0.0824
The information below is about IL_5J7L_296
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_58112.2
Basepair signature
cWW-cWW-L-R-cWW
Number of instances in this motif group
4

Unit IDs

9GXX|1|a|G|1432
9GXX|1|a|A|1433
9GXX|1|a|A|1434
9GXX|1|a|G|1435
*
9GXX|1|a|C|1557
9GXX|1|a|C|1558
9GXX|1|a|U|1559
9GXX|1|a|G|1560
9GXX|1|a|C|1561

Current chains

Chain a
23S rRNA

Nearby chains

Chain c
Large ribosomal subunit protein uL2

Coloring options:


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