IL_9GXX_136

3D structure

PDB id

9GXX (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GXX_136 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0632

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9GXX|1|a|U|1851
9GXX|1|a|U|1852
9GXX|1|a|A|1853
9GXX|1|a|A|1854
9GXX|1|a|U|1855
9GXX|1|a|U|1856
9GXX|1|a|G|1857
9GXX|1|a|A|1858
9GXX|1|a|U|1859
9GXX|1|a|G|1860
*
9GXX|1|a|U|1882
9GXX|1|a|U|1883
9GXX|1|a|G|1884
9GXX|1|a|A|1885
9GXX|1|a|U|1886
9GXX|1|a|C|1887
9GXX|1|a|G|1888
9GXX|1|a|A|1889
9GXX|1|a|A|1890
9GXX|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains

Chain V

Transfer RNA; tRNA