IL_9GXX_165

3D structure

PDB id

9GXX (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

9GXX|1|a|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GXX_165 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.0518

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9GXX|1|a|G|2737
9GXX|1|a|A|2738
9GXX|1|a|U|2739
9GXX|1|a|A|2740
9GXX|1|a|A|2741
9GXX|1|a|G|2742
*
9GXX|1|a|C|2762
9GXX|1|a|G|2763
9GXX|1|a|A|2764
9GXX|1|a|A|2765
9GXX|1|a|A|2766
9GXX|1|a|C|2767

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36A

Chain g

Large ribosomal subunit protein uL6

Chain i

Large ribosomal subunit protein uL13