IL_9GY4_016
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGUC*GCUAC
- Length
- 9 nucleotides
- Bulged bases
- 9GY4|1|5|U|1302, 9GY4|1|5|A|1303
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GY4_016 not in the Motif Atlas
- Geometric match to IL_3MEI_004
- Geometric discrepancy: 0.271
- The information below is about IL_3MEI_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34618.2
- Basepair signature
- cWW-L-cWS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9GY4|1|5|G|443
9GY4|1|5|G|444
9GY4|1|5|U|445
9GY4|1|5|C|446
*
9GY4|1|5|G|1300
9GY4|1|5|C|1301
9GY4|1|5|U|1302
9GY4|1|5|A|1303
9GY4|1|5|C|1304
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Le
- 60S ribosomal protein L32
- Chain Lf
- 60S ribosomal protein L35a
Coloring options: