IL_9GY4_030
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAAGGUGG*UGUUACAGC
- Length
- 17 nucleotides
- Bulged bases
- 9GY4|1|5|G|748, 9GY4|1|5|C|916
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GY4_030 not in the Motif Atlas
- Geometric match to IL_8CRE_022
- Geometric discrepancy: 0.1162
- The information below is about IL_8CRE_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_43858.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9GY4|1|5|G|745
9GY4|1|5|A|746
9GY4|1|5|A|747
9GY4|1|5|G|748
9GY4|1|5|G|749
9GY4|1|5|U|750
9GY4|1|5|G|751
9GY4|1|5|G|752
*
9GY4|1|5|U|911
9GY4|1|5|G|912
9GY4|1|5|U|913
9GY4|1|5|U|914
9GY4|1|5|A|915
9GY4|1|5|C|916
9GY4|1|5|A|917
9GY4|1|5|G|918
9GY4|1|5|C|919
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LM
- 60S ribosomal protein L14
- Chain LS
- 60S ribosomal protein L18a
- Chain s
- 60S acidic ribosomal protein P0
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