IL_9GY4_048
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAAG*UGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GY4_048 not in the Motif Atlas
- Homologous match to IL_8CRE_033
- Geometric discrepancy: 0.1337
- The information below is about IL_8CRE_033
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_50730.2
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
9GY4|1|5|C|1551
9GY4|1|5|G|1552
9GY4|1|5|A|1553
9GY4|1|5|A|1554
9GY4|1|5|G|1555
*
9GY4|1|5|U|1572
9GY4|1|5|G|1573
9GY4|1|5|G|1574
9GY4|1|5|A|1575
9GY4|1|5|G|1576
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LR
- 60S ribosomal protein L19
- Chain Lp
- 60S ribosomal protein L37a
- Chain a
- 60S ribosomal protein L8
Coloring options: