IL_9GY4_060
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUCUU*AAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GY4_060 not in the Motif Atlas
- Geometric match to IL_2OEU_001
- Geometric discrepancy: 0.3547
- The information below is about IL_2OEU_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_46387.3
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
9GY4|1|5|G|1753
9GY4|1|5|U|1754
9GY4|1|5|C|1755
9GY4|1|5|U|1756
9GY4|1|5|U|1757
*
9GY4|1|5|A|1775
9GY4|1|5|A|1776
9GY4|1|5|C|1777
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain G
- Transfer RNA; tRNA
- Chain LD
- 60S ribosomal protein L5
- Chain LI
- Ribosomal protein uL16-like
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