IL_9GY4_072
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UAUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 9GY4|1|5|A|1960
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GY4_072 not in the Motif Atlas
- Homologous match to IL_8CRE_057
- Geometric discrepancy: 0.1988
- The information below is about IL_8CRE_057
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
9GY4|1|5|U|1957
9GY4|1|5|A|1958
9GY4|1|5|U|1959
9GY4|1|5|A|1960
9GY4|1|5|G|1961
9GY4|1|5|A|1962
9GY4|1|5|C|1963
9GY4|1|5|A|1964
9GY4|1|5|G|1965
*
9GY4|1|5|C|2022
9GY4|1|5|C|2023
9GY4|1|5|G|2024
9GY4|1|5|A|2025
9GY4|1|5|A|2026
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LH
- 60S ribosomal protein L9
- Chain LS
- 60S ribosomal protein L18a
- Chain Lm
- Ubiquitin-60S ribosomal protein L40
- Chain s
- 60S acidic ribosomal protein P0
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