IL_9GY4_092
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AACAAUG*CUAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GY4_092 not in the Motif Atlas
- Homologous match to IL_8P9A_302
- Geometric discrepancy: 0.1177
- The information below is about IL_8P9A_302
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_89862.1
- Basepair signature
- cWW-L-tHS-L-R-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9GY4|1|5|A|2832
9GY4|1|5|A|2833
9GY4|1|5|C|2834
9GY4|1|5|A|2835
9GY4|1|5|A|2836
9GY4|1|5|U|2837
9GY4|1|5|G|2838
*
9GY4|1|5|C|3850
9GY4|1|5|U|3851
9GY4|1|5|A|3852
9GY4|1|5|U|3853
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LP
- 60S ribosomal protein L17
- Chain Ld
- 60S ribosomal protein L31
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