IL_9GY4_102

3D structure

PDB id

9GY4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

9GY4|1|5|C|3701

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GY4_102 not in the Motif Atlas

Homologous match to IL_8CRE_089

Geometric discrepancy: 0.1041

The information below is about IL_8CRE_089

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

9GY4|1|5|C|3700
9GY4|1|5|C|3701
9GY4|1|5|A|3702
9GY4|1|5|G|3703
*
9GY4|1|5|C|3749
9GY4|1|5|G|3750

Current chains

Chain 5

28S rRNA

Nearby chains

Chain a

60S ribosomal protein L8