IL_9GY4_106
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UCAAAGU*AAUGAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GY4_106 not in the Motif Atlas
- Homologous match to IL_8CRE_093
- Geometric discrepancy: 0.167
- The information below is about IL_8CRE_093
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_88116.2
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
9GY4|1|5|U|3715
9GY4|1|5|C|3716
9GY4|1|5|A|3717
9GY4|1|5|A|3718
9GY4|1|5|A|3719
9GY4|1|5|G|3720
9GY4|1|5|U|3721
*
9GY4|1|5|A|3732
9GY4|1|5|A|3733
9GY4|1|5|U|3734
9GY4|1|5|G|3735
9GY4|1|5|A|3736
9GY4|1|5|A|3737
9GY4|1|5|G|3738
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain Li
- 60S ribosomal protein L36
- Chain Lz
- 60S ribosomal protein L10a
- Chain a
- 60S ribosomal protein L8
Coloring options: