3D structure

PDB id
9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CAUUG*CCAAGCG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9GY4|1|5|C|4466
9GY4|1|5|A|4467
9GY4|1|5|U|4468
9GY4|1|5|U|4469
9GY4|1|5|G|4470
*
9GY4|1|5|C|4485
9GY4|1|5|C|4486
9GY4|1|5|A|4487
9GY4|1|5|A|4488
9GY4|1|5|G|4489
9GY4|1|5|C|4490
9GY4|1|5|G|4491

Current chains

Chain 5
28S rRNA

Nearby chains

Chain LB
60S ribosomal protein L3
Chain LH
60S ribosomal protein L9
Chain LO
60S ribosomal protein L13a
Chain LV
60S ribosomal protein L23
Chain Lm
Ubiquitin-60S ribosomal protein L40

Coloring options:

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