IL_9GY4_140
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGUAUG*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- 9GY4|1|5|U|4634, 9GY4|1|5|U|4636
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GY4_140 not in the Motif Atlas
- Homologous match to IL_8CRE_127
- Geometric discrepancy: 0.2813
- The information below is about IL_8CRE_127
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_21001.1
- Basepair signature
- cWW-L-R-tHW-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
9GY4|1|5|U|4632
9GY4|1|5|G|4633
9GY4|1|5|U|4634
9GY4|1|5|A|4635
9GY4|1|5|U|4636
9GY4|1|5|G|4637
*
9GY4|1|5|C|4662
9GY4|1|5|G|4663
9GY4|1|5|A|4664
9GY4|1|5|A|4665
9GY4|1|5|G|4666
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LW
- 60S ribosomal protein L24
- Chain Ld
- 60S ribosomal protein L31
Coloring options: