IL_9H0L_050

3D structure

PDB id

9H0L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with cognate tRNASer3 bound to A-site AGC codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

9H0L|1|A|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H0L_050 not in the Motif Atlas

Homologous match to IL_5J7L_051

Geometric discrepancy: 0.0962

The information below is about IL_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06691.1

Basepair signature

cWW-cWS-L-R-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

9H0L|1|A|G|1124
9H0L|1|A|U|1125
9H0L|1|A|U|1126
9H0L|1|A|G|1127
9H0L|1|A|C|1128
*
9H0L|1|A|G|1144
9H0L|1|A|A|1145
9H0L|1|A|A|1146
9H0L|1|A|C|1147
9H0L|1|A|U|1148
9H0L|1|A|C|1149

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9

Chain J

Small ribosomal subunit protein uS10