IL_9H0L_108

3D structure

PDB id

9H0L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with cognate tRNASer3 bound to A-site AGC codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9H0L|1|a|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H0L_108 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0499

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9H0L|1|a|C|1208
9H0L|1|a|U|1209
9H0L|1|a|G|1210
9H0L|1|a|C|1211
9H0L|1|a|G|1212
9H0L|1|a|A|1213
9H0L|1|a|A|1214
9H0L|1|a|G|1215
*
9H0L|1|a|U|1234
9H0L|1|a|G|1235
9H0L|1|a|G|1236
9H0L|1|a|A|1237
9H0L|1|a|G|1238

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein bL20