IL_9H0L_127

3D structure

PDB id

9H0L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with cognate tRNASer3 bound to A-site AGC codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H0L_127 not in the Motif Atlas

Geometric match to IL_5J7L_386

Geometric discrepancy: 0.0451

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

9H0L|1|a|G|1666
9H0L|1|a|G|1667
9H0L|1|a|A|1668
9H0L|1|a|A|1669
9H0L|1|a|C|1670
9H0L|1|a|U|1671
9H0L|1|a|A|1672
9H0L|1|a|G|1673
9H0L|1|a|G|1674
*
9H0L|1|a|C|1990
9H0L|1|a|U|1991
9H0L|1|a|G|1992
9H0L|1|a|U|1993
9H0L|1|a|C|1994

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain j

Large ribosomal subunit protein uL14