IL_9H0L_137

3D structure

PDB id

9H0L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with cognate tRNASer3 bound to A-site AGC codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H0L_137 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0606

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9H0L|1|a|U|1851
9H0L|1|a|U|1852
9H0L|1|a|A|1853
9H0L|1|a|A|1854
9H0L|1|a|U|1855
9H0L|1|a|U|1856
9H0L|1|a|G|1857
9H0L|1|a|A|1858
9H0L|1|a|U|1859
9H0L|1|a|G|1860
*
9H0L|1|a|U|1882
9H0L|1|a|U|1883
9H0L|1|a|G|1884
9H0L|1|a|A|1885
9H0L|1|a|U|1886
9H0L|1|a|C|1887
9H0L|1|a|G|1888
9H0L|1|a|A|1889
9H0L|1|a|A|1890
9H0L|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains

Chain V

Transfer RNA; tRNA