IL_9H21_001
3D structure
- PDB id
- 9H21 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cas9 in complex with tracrRNA and crRNA, Streptococcus thermophilus DGCC 7710 CRISPR3 system
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- AGAG*CGAGUU
- Length
- 10 nucleotides
- Bulged bases
- 9H21|1|B|A|7, 9H21|1|C|U|18
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9H21_001 not in the Motif Atlas
- Geometric match to IL_5FQ5_001
- Geometric discrepancy: 0.2246
- The information below is about IL_5FQ5_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82683.4
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 8
Unit IDs
9H21|1|B|A|5
9H21|1|B|G|6
9H21|1|B|A|7
9H21|1|B|G|8
*
9H21|1|C|C|14
9H21|1|C|G|15
9H21|1|C|A|16
9H21|1|C|G|17
9H21|1|C|U|18
9H21|1|C|U|19
Current chains
- Chain B
- crRNA (5'-R(P*GP*AP*AP*GP*AP*GP*GP*AP*CP*AP*GP*UP*UP*UP*UP*AP*GP*AP*GP*CP*UP*G)-3')
- Chain C
- tracrRNA (62-MER)
Nearby chains
- Chain A
- CRISPR-associated endonuclease Cas9
Coloring options: