IL_9H3G_001

3D structure

PDB id

9H3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.82 Å

Loop

Sequence

ACGGA(PSU)A*UUGAAAU

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22311.2

Basepair signature

cWW-cWW-tSH-tHS-tHS-L-R-cWW

Number of instances in this motif group

11

Unit IDs

9H3G|1|3|A|17
9H3G|1|3|C|18
9H3G|1|3|G|19
9H3G|1|3|G|20
9H3G|1|3|A|21
9H3G|1|3|PSU|22
9H3G|1|3|A|23
*
9H3G|1|A|U|401
9H3G|1|A|U|402
9H3G|1|A|G|403
9H3G|1|A|A|404
9H3G|1|A|A|405
9H3G|1|A|A|406
9H3G|1|A|U|407

Current chains

Chain 3

Ribosomal RNA 5.8S

Chain A

Ribosomal RNA 25S

Nearby chains

Chain AV

Large ribosomal subunit protein eL32z

Chain BM

Large ribosomal subunit protein uL22z