IL_9H3G_099
3D structure
- PDB id
- 9H3G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.82 Å
Loop
- Sequence
- C(5MC)AA(A2M)UGCCUC(OMG)*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 9H3G|1|A|A2M|2279, 9H3G|1|A|C|2285, 9H3G|1|A|C|2304
- QA status
- Modified nucleotides: 5MC, A2M, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9H3G|1|A|C|2275
9H3G|1|A|5MC|2276
9H3G|1|A|A|2277
9H3G|1|A|A|2278
9H3G|1|A|A2M|2279
9H3G|1|A|U|2280
9H3G|1|A|G|2281
9H3G|1|A|C|2282
9H3G|1|A|C|2283
9H3G|1|A|U|2284
9H3G|1|A|C|2285
9H3G|1|A|OMG|2286
*
9H3G|1|A|C|2302
9H3G|1|A|G|2303
9H3G|1|A|C|2304
9H3G|1|A|G|2305
Current chains
- Chain A
- Ribosomal RNA 25S
Nearby chains
- Chain BC
- Small ribosomal subunit protein eS32 eS32z/eS32y/eS32x/eS32w/eS32v
- Chain h1
- Small subunit ribosomal RNA; SSU rRNA
- Chain i2
- Transfer RNA; tRNA
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