IL_9H3G_109

3D structure

PDB id

9H3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.82 Å

Loop

Sequence

GUGAAUC*GGGC

Length

11 nucleotides

Bulged bases

9H3G|1|A|G|2520, 9H3G|1|A|A|2522, 9H3G|1|A|U|2523, 9H3G|1|A|G|2584, 9H3G|1|A|G|2585

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52092.2

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

5

Unit IDs

9H3G|1|A|G|2518
9H3G|1|A|U|2519
9H3G|1|A|G|2520
9H3G|1|A|A|2521
9H3G|1|A|A|2522
9H3G|1|A|U|2523
9H3G|1|A|C|2524
*
9H3G|1|A|G|2583
9H3G|1|A|G|2584
9H3G|1|A|G|2585
9H3G|1|A|C|2586

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain 3

5.8S ribosomal RNA; 5.8S rRNA

Chain BG

Large ribosomal subunit protein eL8y

Chain BN

Large ribosomal subunit protein uL23y

Chain BQ

Large ribosomal subunit protein uL2z