IL_9H3G_164

3D structure

PDB id

9H3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.82 Å

Loop

Sequence

UUG(PSU)U(OMU)*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31545.2

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9H3G|1|h1|U|118
9H3G|1|h1|U|119
9H3G|1|h1|G|120
9H3G|1|h1|PSU|121
9H3G|1|h1|U|122
9H3G|1|h1|OMU|123
*
9H3G|1|h1|A|297
9H3G|1|h1|U|298
9H3G|1|h1|U|299
9H3G|1|h1|C|300
9H3G|1|h1|A|301

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain Aa

Small ribosomal subunit protein eS8z

Chain Ja

Small ribosomal subunit protein eS4x