IL_9H3G_173

3D structure

PDB id

9H3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.82 Å

Loop

Sequence

UAUCAA*UGGUAACG

Length

14 nucleotides

Bulged bases

9H3G|1|h1|U|315, 9H3G|1|h1|U|353

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46174.5

Basepair signature

cWW-cSS-tSS-L-cWW-tHW-cWW

Number of instances in this motif group

7

Unit IDs

9H3G|1|h1|U|313
9H3G|1|h1|A|314
9H3G|1|h1|U|315
9H3G|1|h1|C|316
9H3G|1|h1|A|317
9H3G|1|h1|A|318
*
9H3G|1|h1|U|350
9H3G|1|h1|G|351
9H3G|1|h1|G|352
9H3G|1|h1|U|353
9H3G|1|h1|A|354
9H3G|1|h1|A|355
9H3G|1|h1|C|356
9H3G|1|h1|G|357

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain Aa

Small ribosomal subunit protein eS8z

Chain Va

Small ribosomal subunit protein uS12y

Chain Xa

Small ribosomal subunit protein uS17z