IL_9H3G_204

3D structure

PDB id

9H3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.82 Å

Loop

Sequence

CGAAG*CCUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05821.2

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9H3G|1|h1|C|991
9H3G|1|h1|G|992
9H3G|1|h1|A|993
9H3G|1|h1|A|994
9H3G|1|h1|G|995
*
9H3G|1|h1|C|1011
9H3G|1|h1|C|1012
9H3G|1|h1|U|1013
9H3G|1|h1|A|1014
9H3G|1|h1|G|1015

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain BQ

Large ribosomal subunit protein uL2z

Chain Ma

Small ribosomal subunit protein eS26y

Chain Ua

Small ribosomal subunit protein uS11y