IL_9H3G_212

3D structure

PDB id

9H3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.82 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

9H3G|1|h1|C|1159, 9H3G|1|h1|C|1160

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63596.13

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

23

Unit IDs

9H3G|1|h1|A|1158
9H3G|1|h1|C|1159
9H3G|1|h1|C|1160
9H3G|1|h1|A|1161
*
9H3G|1|h1|U|1619
9H3G|1|h1|C|1620
9H3G|1|h1|C|1621
9H3G|1|h1|C|1622
9H3G|1|h1|U|1623

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain AD

Small ribosomal subunit protein uS7y

Chain AF

Small ribosomal subunit protein uS9z

Chain B1

Messenger RNA (poly-U)

Chain Oa

Small ribosomal subunit protein eS28x

Chain W2

Transfer RNA; tRNA