IL_9H3K_030

3D structure

PDB id

9H3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor d126_(L29)-/(L22)-

Experimental method

ELECTRON MICROSCOPY

Resolution

6.62 Å

Loop

Sequence

GGGAAAC*GGAAGAUGUAACGGGGC

Length

24 nucleotides

Bulged bases

9H3K|1|A|G|1128, 9H3K|1|A|U|1130, 9H3K|1|A|G|1131

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3K_030 not in the Motif Atlas

Homologous match to IL_5J7L_281

Geometric discrepancy: 0.4905

The information below is about IL_5J7L_281

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.3

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

9H3K|1|A|G|1024
9H3K|1|A|G|1025
9H3K|1|A|G|1026
9H3K|1|A|A|1027
9H3K|1|A|A|1028
9H3K|1|A|A|1029
9H3K|1|A|C|1030
*
9H3K|1|A|G|1124
9H3K|1|A|G|1125
9H3K|1|A|A|1126
9H3K|1|A|A|1127
9H3K|1|A|G|1128
9H3K|1|A|A|1129
9H3K|1|A|U|1130
9H3K|1|A|G|1131
9H3K|1|A|U|1132
9H3K|1|A|A|1133
9H3K|1|A|A|1134
9H3K|1|A|C|1135
9H3K|1|A|G|1136
9H3K|1|A|G|1137
9H3K|1|A|G|1138
9H3K|1|A|G|1139
9H3K|1|A|C|1140

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

Large ribosomal subunit protein uL13