9H3K Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9H3K_001 | No text annotation | ||
| HL_9H3K_002 | No text annotation | ||
| HL_9H3K_003 | No text annotation | ||
| HL_9H3K_004 | No text annotation | ||
| HL_9H3K_005 | No text annotation | ||
| HL_9H3K_006 | No text annotation | ||
| HL_9H3K_007 | No text annotation | ||
| HL_9H3K_008 | No text annotation | ||
| HL_9H3K_009 | T-loop with 2 stacked bulged bases | ||
| HL_9H3K_010 | No text annotation | ||
| HL_9H3K_011 | T-loop with unstacked turn | ||
| HL_9H3K_012 | No text annotation | ||
| HL_9H3K_013 | No text annotation | ||
| HL_9H3K_014 | GNRA | ||
| HL_9H3K_015 | GNRA | ||
| HL_9H3K_016 | No text annotation | ||
| HL_9H3K_017 | T-loop with 2 stacked bulged bases | ||
| HL_9H3K_018 | No text annotation | ||
| HL_9H3K_019 | No text annotation | ||
| HL_9H3K_020 | GNRA | ||
| HL_9H3K_021 | No text annotation | ||
| HL_9H3K_022 | GNRA | ||
| HL_9H3K_023 | No text annotation | ||
| HL_9H3K_024 | Externally structured | ||
| HL_9H3K_025 | GNRA | ||
| HL_9H3K_026 | No text annotation | ||
| HL_9H3K_027 | GNRA variation | ||
| HL_9H3K_028 | No text annotation | ||
| HL_9H3K_029 | GNRA | ||
| HL_9H3K_030 | Ribsomal LSU H95 | ||
| HL_9H3K_031 | No text annotation | ||
| HL_9H3K_032 | Mini UNCG with extended bulge | ||
| HL_9H3K_033 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9H3K_001 | Triple sheared with non-canonical cWW | ||
| IL_9H3K_002 | Single bulged A | ||
| IL_9H3K_003 | Minor groove platform | ||
| IL_9H3K_004 | No text annotation | ||
| IL_9H3K_005 | No text annotation | ||
| IL_9H3K_006 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_9H3K_007 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_9H3K_008 | No text annotation | ||
| IL_9H3K_009 | No text annotation | ||
| IL_9H3K_010 | No text annotation | ||
| IL_9H3K_011 | No text annotation | ||
| IL_9H3K_012 | Double sheared | ||
| IL_9H3K_013 | Isolated non-canonical cWW pair | ||
| IL_9H3K_014 | AAA cross-strand stack | ||
| IL_9H3K_015 | Single stack bend | ||
| IL_9H3K_016 | Isolated non-canonical cWW pair | ||
| IL_9H3K_017 | No text annotation | ||
| IL_9H3K_018 | Single stack bend | ||
| IL_9H3K_019 | 90 degree turn | ||
| IL_9H3K_020 | No text annotation | ||
| IL_9H3K_021 | Stack outside cWW | ||
| IL_9H3K_022 | Single stack bend | ||
| IL_9H3K_023 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_9H3K_024 | Minor groove platform | ||
| IL_9H3K_025 | Single bulged C | ||
| IL_9H3K_026 | UAA/GAN | ||
| IL_9H3K_027 | SSU/LSU pseudoknot | ||
| IL_9H3K_028 | Single bulged U | ||
| IL_9H3K_029 | Kink-turn related | ||
| IL_9H3K_030 | No text annotation | ||
| IL_9H3K_031 | Isolated cWS basepair | ||
| IL_9H3K_032 | No text annotation | ||
| IL_9H3K_033 | Kink-turn | ||
| IL_9H3K_034 | Major groove platform | ||
| IL_9H3K_035 | Isolated non-canonical cWW with bulges | ||
| IL_9H3K_036 | No text annotation | ||
| IL_9H3K_037 | Major groove platform with intercalation | ||
| IL_9H3K_038 | No text annotation | ||
| IL_9H3K_039 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_9H3K_040 | C-loop | ||
| IL_9H3K_041 | UAA/GAN related, with intercalation | ||
| IL_9H3K_042 | Multiple bulged bases | ||
| IL_9H3K_043 | UAA/GAN with extra cWW | ||
| IL_9H3K_044 | Isolated near basepair | ||
| IL_9H3K_045 | Single bulged A | ||
| IL_9H3K_046 | No text annotation | ||
| IL_9H3K_047 | Major groove intercalation | ||
| IL_9H3K_048 | Multiple bulged bases with non-canonical cWW |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9H3K_001 | No text annotation | ||
| J3_9H3K_002 | No text annotation | ||
| J3_9H3K_003 | No text annotation | ||
| J3_9H3K_004 | No text annotation | ||
| J3_9H3K_005 | No text annotation | ||
| J3_9H3K_006 | No text annotation | ||
| J4_9H3K_001 | No text annotation | ||
| J4_9H3K_002 | No text annotation | ||
| J4_9H3K_003 | No text annotation | ||
| J4_9H3K_004 | No text annotation | ||
| J5_9H3K_001 | No text annotation | ||
| J5_9H3K_002 | No text annotation | ||
| J5_9H3K_003 | No text annotation | ||
| J6_9H3K_001 | No text annotation | ||
| J7_9H3K_001 | No text annotation | ||
| J7_9H3K_002 | No text annotation |
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