IL_9H3L_066

3D structure

PDB id

9H3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C_(L29)-/(L22)-

Experimental method

ELECTRON MICROSCOPY

Resolution

5.84 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

9H3L|1|A|A|2879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3L_066 not in the Motif Atlas

Homologous match to IL_9DFE_107

Geometric discrepancy: 0.2054

The information below is about IL_9DFE_107

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

9H3L|1|A|G|2838
9H3L|1|A|G|2839
*
9H3L|1|A|U|2878
9H3L|1|A|A|2879
9H3L|1|A|C|2880

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein bL17