IL_9H3N_020

3D structure

PDB id

9H3N (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C_(L22)-~H61

Experimental method

ELECTRON MICROSCOPY

Resolution

3.69 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

9H3N|1|A|G|776, 9H3N|1|A|A|788, 9H3N|1|A|A|789, 9H3N|1|A|U|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3N_020 not in the Motif Atlas

Geometric match to IL_5J7L_265

Geometric discrepancy: 0.317

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

9H3N|1|A|G|775
9H3N|1|A|G|776
9H3N|1|A|G|777
*
9H3N|1|A|C|787
9H3N|1|A|A|788
9H3N|1|A|A|789
9H3N|1|A|U|790
9H3N|1|A|C|791

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34