IL_9H3N_059

3D structure

PDB id

9H3N (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C_(L22)-~H61

Experimental method

ELECTRON MICROSCOPY

Resolution

3.69 Å

Loop

Sequence

UCACU*AAA

Length

8 nucleotides

Bulged bases

9H3N|1|A|A|2726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3N_059 not in the Motif Atlas

Homologous match to IL_9DFE_103

Geometric discrepancy: 0.3619

The information below is about IL_9DFE_103

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

9H3N|1|A|U|2680
9H3N|1|A|C|2681
9H3N|1|A|A|2682
9H3N|1|A|C|2683
9H3N|1|A|U|2684
*
9H3N|1|A|A|2725
9H3N|1|A|A|2726
9H3N|1|A|A|2727

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

Large ribosomal subunit protein bL17