IL_9H3O_021

3D structure

PDB id

9H3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C_(L22)-_GAC

Experimental method

ELECTRON MICROSCOPY

Resolution

4.54 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

9H3O|1|A|U|846, 9H3O|1|A|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3O_021 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.365

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

9H3O|1|A|A|844
9H3O|1|A|A|845
9H3O|1|A|U|846
9H3O|1|A|U|847
9H3O|1|A|C|848
*
9H3O|1|A|G|930
9H3O|1|A|U|931
9H3O|1|A|U|932
9H3O|1|A|A|933
9H3O|1|A|U|934

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Z

Large ribosomal subunit protein uL30