IL_9H3O_026

3D structure

PDB id

9H3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C_(L22)-_GAC

Experimental method

ELECTRON MICROSCOPY

Resolution

4.54 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

9H3O|1|A|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H3O_026 not in the Motif Atlas

Homologous match to IL_4WF9_035

Geometric discrepancy: 0.1527

The information below is about IL_4WF9_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

9H3O|1|A|C|994
9H3O|1|A|C|995
9H3O|1|A|A|996
*
9H3O|1|A|U|1159
9H3O|1|A|G|1160

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

Large ribosomal subunit protein uL13

Chain Q

Large ribosomal subunit protein bL20

Chain R

Large ribosomal subunit protein bL21

Chain Z

Large ribosomal subunit protein uL30